Query PrimeKG knowledge graph nodes and neighbors using Python and pandas.
npx skills add https://github.com/OwnLabAI/ownlab --skill primekg-ownlabai
Please help me install this Agent Skill. Skill: primekg Source: https://github.com/OwnLabAI/ownlab/tree/main/mart/skills/scientific-skills/primekg Command: npx skills add https://github.com/OwnLabAI/ownlab --skill primekg-ownlabai
PrimeKG Knowledge Graph provides researchers with a programmable interface to explore multiscale biomedical data by connecting genes, drugs, diseases, phenotypes, and more in a large integrated graph.
Run a simple query against PrimeKG to fetch a disease context using the Python scripts in scripts/query_primekg.py.
High-intent search queries and answers about installing and using this skill.
Query a biomedical knowledge graph for drug repurposing by loading PrimeKG data from a local CSV file using pandas, then calling Python functions to search nodes and retrieve associated genes, drugs, and phenotypes.
Network pharmacology data retrieval connects genes, drugs, and diseases by traversing a multiscale biomedical graph of 129k nodes and 4M edges, allowing researchers to retrieve direct neighbors and evidence across biological entities.
Yes, you can use pandas to load a local CSV file for gene-disease relationship mapping, as the workflow relies on a pandas-based Python environment to load the PrimeKG graph data and execute programmatic queries.
The best way to identify drug targets using a biomedical graph is to query disease contexts by summarizing associated genes and phenotypes, leveraging the integrated network to find potential repurposing opportunities.
Yes, PrimeKG works with Python scripts by exposing functions in the query workflow for searching disease nodes, getting direct neighbors, and building structured disease contexts from the graph data.
Limitations of using a local CSV file for biomedical knowledge graph queries include requiring sufficient local storage and memory to load the entire 129k-node and 4M-edge graph structure into pandas before executing any search or context analysis.
dralkhQuery PrimeKG CSV data to retrieve biomedical entities and relationships.
AlterLab-IEUExtract biological entity context from PrimeKG for gene, drug, disease, and phenotype relationships.
JosephWoodallQuery PrimeKG to search nodes, fetch neighbors, and analyze disease context.
shushuznSearch biomedical entities and extract neighbor associations from the PrimeKG knowledge graph.
