protein-structure-for-gene
CommunityFetch protein structure data for a gene.
AuthorMDhewei
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Retrieve comprehensive protein structural information for a given gene symbol by resolving to a UniProt accession, gathering domain/feature annotations, listing experimental PDB structures from RCSB, fetching AlphaFold2 predictions from AlphaFold DB, and rendering a publication-quality linear domain map.
Core Features & Use Cases
- UniProt metadata retrieval: canonical accession, gene name, organism, sequence length, and features.
- Domain and feature annotation retrieval from UniProt.
- PDB structure discovery from RCSB (experimental structures) with method, resolution, and PubMed references.
- AlphaFold2 prediction entry lookup from AlphaFold DB.
- Domain map rendering: publication-ready linear schematic of annotated features.
- All data is live from public APIs and does not require local data files.
Quick Start
Provide a gene symbol and an output directory to run the full protein-structure-for-gene workflow.
Dependency Matrix
Required Modules
matplotlibpandasrequests
Components
scripts
💻 Claude Code Installation
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Please help me install this Skill: Name: protein-structure-for-gene Download link: https://github.com/MDhewei/bioinfor-claw/archive/main.zip#protein-structure-for-gene Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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