protein-structure-visualizer
CommunityVisualize and analyze protein structures.
Education & Research#visualization#pdb#alphafold#protein-structure#ppi#secondary-structure#pocket-detection
AuthorMDhewei
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Visualize and analyze protein structures from PDB IDs, AlphaFold UniProt entries, or local PDB files.
Core Features & Use Cases
- Interactive 3D structure visualization via an HTML viewer (py3Dmol) for full proteins or specific chains/residues.
- Per-residue analyses including Cα coordinates, B-factors / pLDDT, secondary structure timelines, SASA-based pocket detection, and conservation coloring.
- Protein-Protein Interaction (STRING) networks and integration of structural data to contextualize function; applicable to comparative studies and drug-target exploration.
Quick Start
Run a full analysis on PDB 1TUP and generate the interactive viewer, pocket results, and conservation data in the specified output directory.
Dependency Matrix
Required Modules
biopythonmatplotlibnetworkxnumpypandaspy3Dmolrequests
Components
scripts
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: protein-structure-visualizer Download link: https://github.com/MDhewei/bioinfor-claw/archive/main.zip#protein-structure-visualizer Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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