proteina-complexa-viz

Visualize protein design results in PyMOL by running the Proteina-Complexa workflow, which orchestrates model execution and automatically generates guided visualizations of protein binder, ligand binder, and motif scaffolding outputs directly in the PyMOL environment.

Automate protein binder and ligand binder pipelines by using an orchestration workflow that guides target selection, assembles configuration files, executes the design models, and visualizes the resulting structures without manual intervention between steps.

Yes, you need a PyMOL bridge to connect Claude Code with local computations, along with installed PyMOL and Proteina-Complexa tools, to execute the end-to-end design and visualization workflow.

Yes, you can configure AME motif scaffolding and monomer motif tasks in PyMOL. The workflow provides guided config creation, target definition, and post-run visualization specifically for these motif-based protein design pipelines.

Yes, the Proteina-Complexa workflow supports end-to-end run orchestration from environment setup through config assembly, model generation, and final result visualization in PyMOL, turning complex pipelines into repeatable sessions.