Alex Naka
Community@anaka · San Diego, CA
[f"{s}science" for s in ["data ", "neuro", "protein "]] + ["generative art", "dogs"]
Agent Skills by Alex Naka
Showing 21 vetted skills indexed across 2 GitHub repositories.
ANakapr-review-fix
Fetch PR state, analyze diffs, apply fixes, and push updates.
ANakaplan-do-review-renew
Coordinate multi-session task workflows from triage to handoff.
ANakapymol-setup
Install pymol-agent-bridge and configure a local socket for Claude-PyMOL integration.
ANakadesign-comparison
Compare, rank, and batch-visual QC protein design candidates in PyMOL.
ANakala-proteina-viz
Automate La-Proteina protein generation setup and PyMOL visualization workflows.
ANakaSkill Development
Create, structure, and validate Claude Code plugin skills with SKILL.md frontmatter.
ANakapymol-fundamentals
Automate PyMOL molecular visualization and basic analysis workflows.
ANakarfdiffusion-viz
Visualize RFdiffusion outputs and QC backbone designs in PyMOL.
ANakaantibody-visualization
Visualize antibody structures and interactions in PyMOL.
ANakastructure-alignment-analysis
Align and compare protein structures in PyMOL using align, cealign, and RMSD.
ANakaproteinmpnn-viz
Visualize ProteinMPNN/LigandMPNN design outputs in PyMOL, highlighting designed versus fixed residues.
ANakapublication-figures
Automate publication-quality PyMOL figure creation with standardized styling and export pipelines.
ANakapymol
Launch a PyMOL session via pymol-agent-bridge for molecular visualization and image export.
ANakabinding-site-visualization
Visualize protein-ligand binding sites with PyMOL and generate publication-ready figures.
ANakamiscellaneous
Provide PyMOL command patterns for visualization, selection, and scripting tasks.
ANakarfd3
Build interactive RFD3 configurations for PyMOL-based protein design workflows.
ANakaprotein-structure-basics
Visualize protein structures in PyMOL with cartoon, surface, and stick representations.
ANakaproteina-complexa-viz
Automate Proteina-Complexa design workflows from setup to PyMOL visualization.
ANakaalphafold-validation
Analyze AlphaFold/ESMFold predictions and visualize pLDDT and pAE confidence metrics in PyMOL.
ANakamovie-creation
Automate PyMOL animation and movie creation from structural data.
ANakadesign-interface-analysis
Analyze protein-protein and protein-ligand interfaces in designed complexes via PyMOL.