Compare, rank, and batch-visual QC protein design candidates in PyMOL.
npx skills add https://github.com/ANaka/claudemol --skill design-comparison
Please help me install this Agent Skill. Skill: design-comparison Source: https://github.com/ANaka/claudemol/tree/main/claude-plugin/skills/design-comparison Command: npx skills add https://github.com/ANaka/claudemol --skill design-comparison
Compare, rank, and batch-visual QC multiple protein design candidates in PyMOL.
Load your designs into PyMOL and run the built-in ranking workflow to see the top candidates.
High-intent search queries and answers about installing and using this skill.
You can batch load multiple protein design PDBs into PyMOL and run a ranking workflow to compare candidates by mean pLDDT, RMSD, and length, exporting a ranked list of top designs.
Yes, you can overlay template structures or AlphaFold predictions with your design candidates in PyMOL to perform side-by-side visual quality control and check structural alignment.
Evaluating RFdiffusion and ProteinMPNN design iterations is done by tracking design rounds, overlaying candidates with templates, and computing pLDDT-based scores and RMSD to rank quality.
No external dependencies are required. The workflow operates entirely within PyMOL to load PDBs, compute structural metrics like RMSD and pLDDT, and export the ranked design results.
Loading multiple protein structures into PyMOL allows the workflow to automatically compute RMSD against templates and calculate mean pLDDT scores to generate a ranked comparison of all candidates.
Using PyMOL for batch visual QC enables direct side-by-side visualization, template overlays, and integrated metric calculation like RMSD and pLDDT, streamlining the ranking of multiple design variants.
Teng-bioRetrieve protein structures from RCSB PDB, PDBe, and AlphaFold with disambiguation and quality assessment.
ANakaAnalyze AlphaFold/ESMFold predictions and visualize pLDDT and pAE confidence metrics in PyMOL.
PKU-YuanGroupConverts PDF documents to clean, structured Markdown.
ANakaAlign and compare protein structures in PyMOL using align, cealign, and RMSD.
