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pymol

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Launch and control PyMOL from Claude.

Education & Research#automation#integration#cli#structure#visualization#session#pymol
AuthorANaka
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Establish a smooth, reliable PyMOL session workflow from Claude, enabling quick visualization and interactive manipulation of molecular structures without manual setup.

Core Features & Use Cases

  • pymol-fundamentals - Basic visualization, selections, representations
  • pymol-setup - First-time configuration and environment setup
  • structure-alignment-analysis - Structure comparisons and alignment
  • publication-figures - High-quality figure export for publications
  • binding-site-visualization - Protein-ligand binding site insights
  • miscellaneous - Additional PyMOL utility commands

Quick Start

Run /pymol-setup to install and configure the bridge, then ask Claude to launch and connect to a PyMOL session via the pymol-agent-bridge.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: pymol
Download link: https://github.com/ANaka/claudemol/archive/main.zip#pymol

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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