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protrek-search

Official

Find proteins via semantic cross-modal search.

Education & Research#bioinformatics#structure#sequence#text#semantic-search#protein#cross-modal
Authorcultivarium
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Retrieve semantically relevant protein entries by querying across sequence, structure, and free-text descriptions, enabling cross-modal discovery without relying on exact sequence matches.

Core Features & Use Cases

  • Tri-modal search across sequence, structure, and text via a hosted ProTrek API.
  • Supports sequence → sequence, sequence → text, and text → sequence/structure queries for annotation, homolog discovery, and cross-modal retrieval across Swiss-Prot and related databases.
  • Use case: discover proteins with similar function to a description or annotate an unknown sequence with functional terms.

Quick Start

Query ProTrek with a sequence or description to retrieve similar proteins and functional annotations.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: protrek-search
Download link: https://github.com/cultivarium/hermes-starter-kit/archive/main.zip#protrek-search

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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