skills.rest
u9401066
u9401066COMMUNITY
Explore all skills by this author →
GitHub

pubmed-export-citations

Export PubMed citations to RIS, BibTeX, Medline, CSL, and CSV formats.

24|8|Updated Dec 2, 2025
Search Tags:#automation#citations#bibtex#export#pubmed#ris#reference-manager
One-click install
npx skills add https://github.com/u9401066/pubmed-search-mcp --skill pubmed-export-citations
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: pubmed-export-citations
Source: https://github.com/u9401066/pubmed-search-mcp/tree/main/.claude/skills/pubmed-export-citations
Command: npx skills add https://github.com/u9401066/pubmed-search-mcp --skill pubmed-export-citations

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

This Skill eliminates the tedious manual work of exporting PubMed citations to reference managers, enabling seamless integration with EndNote, Zotero, Mendeley, and others.

Core Features & Use Cases

  • Export citations in RIS, BibTeX, Medline, CSL, and CSV formats for compatibility with major reference managers.
  • Accepts PMIDs or 'last' results and can optionally include abstracts.
  • Supports both official and local data sources for flexible workflows.

Quick Start

Search PubMed for your topic and export the latest results in RIS format.

Frequently Asked Questions about pubmed-export-citations

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I export PubMed citations to a reference manager like Zotero or EndNote?▼

You can export PubMed citations by providing PMIDs or your latest search results to generate RIS, BibTeX, Medline, CSL, or CSV files for direct import into Zotero, EndNote, or Mendeley.

Can I include abstracts when exporting PubMed search results to BibTeX?▼

Yes, you can include abstracts when exporting PubMed results to BibTeX. The export API accepts an include_abstract parameter to append full abstract text alongside your citation records.

What citation formats are supported for exporting PubMed records?▼

Supported citation formats include RIS, BibTeX, Medline, CSL, and CSV, ensuring broad compatibility across major reference managers like EndNote, Zotero, and Mendeley.

Is it possible to automate PubMed citation exports for specific PMIDs?▼

Yes, automating PubMed citation exports is possible by utilizing the programmable prepare_export API, which accepts specific PMIDs, desired output formats, and data source preferences to tailor your workflow.

Does the PubMed citation export work with local data sources?▼

Yes, PubMed citation export supports both official and local data sources, providing flexible workflows to extract citation records from local PubMed data caches if needed.

Related Skills

Explore More Education & Research Skills→
Runchuan-BURunchuan-BU
401

pubmed-search

Search PubMed via NCBI Entrez and BioPython for ranked biomedical literature metadata.

Community
Intermediate
MearmanMearman
3

bib-validate

Validate BibTeX, BibLaTeX, RIS, EndNote XML, and CSL JSON bibliography files.

Community
Intermediate
lgililgili

Research PubMed

Search PubMed via NCBI E-utilities and return article metadata with PMIDs.

Community
Intermediate
ovachieverovachiever
52

citation-management

Convert DOIs, PMIDs, and arXiv IDs to validated BibTeX citations.

Community
Advanced