Queries Ensembl REST endpoints for genomic annotations, sequences, and variants.
npx skills add https://github.com/IDEA-XL/MolClaw --skill query-ensembl-idea-xl
Please help me install this Agent Skill. Skill: query-ensembl Source: https://github.com/IDEA-XL/MolClaw/tree/main/.claude/skills/query-ensembl Command: npx skills add https://github.com/IDEA-XL/MolClaw --skill query-ensembl-idea-xl
Queries Ensembl to retrieve gene coordinates, sequences, variants, and gene structures when users ask for genomic information such as exon/transcript details or cross-species comparisons.
Ask me for the genomic location or sequence of a gene using Ensembl REST endpoints.
High-intent search queries and answers about installing and using this skill.
Querying Ensembl for gene coordinates and genomic sequences involves using REST endpoints like /lookup/symbol and /sequence/id to fetch gene metadata and retrieve genomic, cDNA, or protein sequences returned as JSON responses.
Looking up rsID variant annotations in Ensembl is done by querying the /variation REST endpoint, which retrieves detailed variant information and annotations formatted as JSON.
The best way to get exon and transcript structure from Ensembl is querying the /overlap/region REST endpoint, which retrieves overlapping genomic features and detailed gene structures for a specified region.
Yes, you can retrieve cross-species homologs and orthologs using the Ensembl REST API by querying the /homology endpoint, which returns comparative genomics data for specified gene IDs.
Querying Ensembl REST endpoints requires no specific bioinformatics dependencies or environment setup, as the API returns standard JSON responses directly accessible via HTTP requests.
google-deepmindResolve gene symbols and Ensembl IDs, retrieve sequences, and predict variant effects via Ensembl REST APIs.
AlterLab-IEUQuery Ensembl REST API for genes, sequences, variants, and orthologs.
jackspaceQuery the Ensembl REST API for gene, sequence, and variant data.
yf8578Query the Ensembl REST API for genomic annotations, sequences, and variants.
