Query the Ensembl REST API for genomic annotations, sequences, and variants.
npx skills add https://github.com/yf8578/clawomics --skill query-ensembl-yf8578
Please help me install this Agent Skill. Skill: query-ensembl Source: https://github.com/yf8578/clawomics/tree/main/skills/query-ensembl Command: npx skills add https://github.com/yf8578/clawomics --skill query-ensembl-yf8578
This Skill provides programmatic access to the Ensembl REST API, enabling users to retrieve detailed genomic information for genes, variants, and sequences.
Use the query-ensembl skill to look up the gene BRCA2 and print its Ensembl ID and genomic location.
High-intent search queries and answers about installing and using this skill.
To query the Ensembl REST API for genomic data, you can look up genes by their symbol or Ensembl ID to retrieve their exact genomic location, description, and sequences. This allows direct retrieval of genomic, cDNA, or protein sequences for specific identifiers.
Yes, you can find cross-species homologs using Ensembl by performing orthologous gene searches. This functionality allows researchers to input a gene of interest and identify its orthologs in different species, such as finding the mouse genome equivalent of a human gene.
Yes, the Skill supports variant analysis by querying variants using their rsIDs. It retrieves the genomic context and potential effects of the variant, providing detailed genomic information directly from the Ensembl REST API for sequence annotation.
The best way to identify features within a specific genomic region is to perform a regional overlap query using the Ensembl REST API. This retrieves all genes and transcripts located within the specified genomic coordinates for sequence annotation.
Yes, you need the requests library and json module installed in your Python environment to use this Skill. These dependencies are required to handle the HTTP requests and parse the JSON responses returned by the Ensembl REST API for genomic annotations.
google-deepmindResolve gene symbols and Ensembl IDs, retrieve sequences, and predict variant effects via Ensembl REST APIs.
IDEA-XLQueries Ensembl REST endpoints for genomic annotations, sequences, and variants.
nahisahoFetch genomic coordinates, transcripts, and metadata via the Ensembl REST API.
sanand0Access Ensembl REST API for gene lookups, sequence retrieval, and VEP variant analysis.
