Search GEO databases for gene expression datasets by keywords and accession types.
npx skills add https://github.com/IDEA-XL/MolClaw --skill query-geo-idea-xl
Please help me install this Agent Skill. Skill: query-geo Source: https://github.com/IDEA-XL/MolClaw/tree/main/.claude/skills/query-geo Command: npx skills add https://github.com/IDEA-XL/MolClaw --skill query-geo-idea-xl
## What problem does it solve? Researchers need to locate useful public gene expression datasets in NCBI GEO quickly, without sifting through irrelevant results, to support downstream analyses.
## Core Features & Use Cases
Run a keyword search like "breast cancer RNA-seq" to locate matching GEO datasets and fetch summaries.
High-intent search queries and answers about installing and using this skill.
You can find public gene expression datasets in NCBI GEO by running keyword searches for disease terms, tissues, or experiment types. The tool queries Entrez and GEO APIs to retrieve matching dataset summaries and metadata for quick review.
Searching for GEO series and platform data retrieves summaries that include dataset size, organism, platform, and sample count. This metadata allows researchers to compare RNA-seq and microarray studies at a glance for meta-analysis.
Yes, you can perform accession lookups for specific types like GSE and GDS. The tool uses Entrez and GEO APIs to fetch dataset summaries and metadata directly associated with those accession identifiers.
Yes, this works for both RNA-seq and microarray datasets in GEO. Keyword searches will discover GEO series across these experiment types, fetching associated metadata to support downstream research inquiries.
The best way to locate GEO datasets for a disease or tissue inquiry is to run a keyword search like "breast cancer RNA-seq." This queries GEO databases and returns matching public gene expression datasets with robust parsing.
Using a dedicated search tool prevents sifting through irrelevant results when locating public gene expression datasets. It parses Entrez and GEO APIs to retrieve clear dataset summaries, saving time during meta-analysis preparation.
Runchuan-BUSearch GEO databases for gene expression datasets by keyword, organism, and accession type.
yf8578Query NCBI GEO for public RNA-seq and microarray datasets by keyword, organism, or accession number.
ovachieverSearch GEO datasets and download gene expression data via E-utilities and GEOparse.
hxk622Search and download NCBI GEO microarray and RNA-seq datasets in SOFT and Matrix formats.
