Search GEO databases for gene expression datasets by keyword, organism, and accession type.
npx skills add https://github.com/Runchuan-BU/BioClaw --skill query-geo
Please help me install this Agent Skill. Skill: query-geo Source: https://github.com/Runchuan-BU/BioClaw/tree/main/.claude/skills/query-geo Command: npx skills add https://github.com/Runchuan-BU/BioClaw --skill query-geo
Researchers need to discover public gene expression datasets in GEO for RNA-seq and microarray studies, but manually searching and compiling metadata is time-consuming and error-prone.
Ask me to search GEO for a keyword and I will return matching GSE/GDS entries with summaries.
High-intent search queries and answers about installing and using this skill.
Search GEO by keyword, organism, and accession type like GSE or GDS to find public gene expression datasets, returning structured results with accession IDs, titles, platforms, sample counts, and concise descriptions.
Yes, you can retrieve GSE Series entries for microarray data, which include direct URLs for quick download and downstream analysis. The query returns accession, title, platform, sample count, and a concise description.
Apply GEO queries to disease-oriented searches to discover public RNA-seq and microarray datasets, satisfying programmatic search requirements by parsing terms and presenting ready-to-use summaries with sample counts and platforms.
Querying GEO returns structured results for RNA-seq datasets that include the accession, title, platform, sample count, and a concise summary. This metadata supports quick evaluation before downloading.
Use programmatic GEO queries to handle search terms, parse results, and present ready-to-use summaries for GDS and GSE entries, avoiding manual searching errors and returning structured metadata including sample counts and direct URLs.
Use GSE to explore Series entries with direct URLs for downstream analysis, or GDS to find curated GEO dataset profiles. Searching by accession type filters results to match specific RNA-seq or microarray research requirements.
IDEA-XLSearch GEO databases for gene expression datasets by keywords and accession types.
ovachieverSearch GEO datasets and download gene expression data via E-utilities and GEOparse.
EpiphyticRun nf-core Nextflow pipelines for RNA-seq, variant, and ATAC-seq analyses.
nahisahoSearch ArrayExpress and BioStudies for expression experiments and retrieve metadata.
