Validate GroovyDoc blocks for input/output alignment and tag ordering.
npx skills add https://github.com/bactopia/bactopia --skill review-groovydoc
Please help me install this Agent Skill. Skill: review-groovydoc Source: https://github.com/bactopia/bactopia/tree/main/.claude/skills/review-groovydoc Command: npx skills add https://github.com/bactopia/bactopia --skill review-groovydoc
This Skill helps ensure GroovyDoc accuracy across bactopia modules and subworkflows by auditing documentation against standards and surfacing drift.
Run a GroovyDoc audit across the codebase to report findings using bactopia-lint.
High-intent search queries and answers about installing and using this skill.
You can validate GroovyDoc accuracy by running an audit that checks @output/@input alignment, @modules/@subworkflows completeness, valid @citation keys, and proper tag ordering across bactopia modules and subworkflows to surface documentation drift.
GroovyDoc documentation drifts from module code during CI when @output/@input fields, @modules/@subworkflows listings, or @citation keys are updated in code but not reflected in the docs. An audit enforces required sections, tag order, and formatting to identify these mismatches.
To fix GroovyDoc inconsistencies in bactopia modules, execute a GroovyDoc audit to identify mismatches in @output/@input alignment, @modules/@subworkflows listings, and @citation keys, then apply the generated patch set for review to correct the documentation drift.
Yes, bactopia-lint supports GroovyDoc validation for code reviews by checking tag order, formatting, and presence of required sections across modules and subworkflows. It surfaces documentation drift and enforces rules like @output/@input alignment and valid @citation keys.
The best way to lint GroovyDoc blocks for required sections and formatting is to run an automated audit that checks tag ordering, @output/@input alignment, @modules/@subworkflows completeness, and valid @citation keys to enforce documentation standards across the codebase.
Yes, you need conda installed as a dependency to run a GroovyDoc audit across modules and subworkflows. Along with bactopia-lint, conda provides the environment required to execute the validation scripts that surface documentation drift and check tag ordering.
bactopiaScaffold Bactopia modules from Bioconda packages with standard files and tests.
bactopiaScaffold Bactopia subworkflows with main.nf, tests, and configuration files.
JamesPrialRoute Go linting tasks to vet, staticcheck, and golangci-lint.
ozan-fnCreate and review documentation for Golang projects with examples and guidelines.
