review-recipes

What problem does it solve?

The Review Recipes skill prevents invalid or low-quality microbial media recipe records from entering CultureMech by catching schema violations, broken identifiers, incorrect ontology linkages, and inconsistent preparation metadata before KG export.

Core Features & Use Cases

• Schema validation for recipes and solutions: Confirms required fields, enum values, and LinkML schema compliance so downstream KG export won’t fail.
• Ingredient and ontology linkage checks: Verifies MediaIngredientMech IDs exist and that CHEBI/ontology term mappings are resolvable, highlighting unmapped ingredients and placeholders.
• Cross-reference validation: Ensures solution references and ingredient composition relationships are internally consistent.
• Data quality scoring with actionable priorities: Groups findings into P1–P4 with rules tailored to export-blocking errors versus enrichment opportunities.
• Batch reporting and safe auto-fixes: Generates human- and machine-readable validation reports and applies limited “safe corrections” (e.g., units normalization, placeholder removal) when appropriate.

Quick Start

Run a batch pre-export validation for all recipes with P1–P3 filtering and generate an HTML dashboard report.