Run Bactopia nf-tests against target components and generate timestamped logs directories.
npx skills add https://github.com/bactopia/bactopia --skill run-tests-bactopia
Please help me install this Agent Skill. Skill: run-tests Source: https://github.com/bactopia/bactopia/tree/main/.claude/skills/run-tests Command: npx skills add https://github.com/bactopia/bactopia --skill run-tests-bactopia
Runs the Bactopia nf-tests suite via bactopia-test and produces a timestamped logs/ directory that /review-tests can interpret. Use when asked to run tests, execute tests, test a module, test a subworkflow, test a workflow, or validate a change. Accepts optional tier and component arguments (e.g., "run tests on snippy", "test abricate_run module", "test amrfinderplus subworkflow").
Invoke the wrapper to run tests for a specific component and generate a timestamped logs directory ready for review.
High-intent search queries and answers about installing and using this skill.
Run nf-tests for a Bactopia module or subworkflow by invoking the bactopia-test wrapper with the target component name. The Skill executes the test suite and captures all output into a timestamped logs directory for review.
Capturing Bactopia test logs is handled automatically by running the bactopia-test wrapper, which generates a timestamped logs/ directory at the repository root containing the live output for per-component visibility.
You can filter Bactopia nf-tests by applying optional --tier and --include constraints when executing the bactopia-test wrapper, allowing you to target specific modules, subworkflows, or workflows.
Yes, executing Bactopia nf-tests requires conda, python3, and the bactopia-test dependency to be available in your environment, ensuring safe defaults and clear guardrails during test orchestration.
A missing reviewable logs directory indicates the bactopia-test wrapper did not execute successfully. Ensure your environment has conda and python3 configured properly so the wrapper can generate the timestamped logs/ output.
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