sam-bam-basics
CommunityMaster the foundational concepts of SAM and BAM file formats.
Authorpradyumnasagar
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill helps researchers understand the key elements of SAM and BAM files, essential for downstream analysis in bioinformatics.
Core Features & Use Cases
- Understand SAM/BAM File Format: Learn the structure and elements of SAM and BAM files.
- Basic Operations: Execute essential commands for filtering, extracting, and sorting reads.
- Use Case: Use this Skill to filter reads with high mapping quality from a BAM file, enabling focused analysis on high-quality data.
Quick Start
Use the sam-bam-basics skill to filter out reads with a mapping quality (MAPQ) less than 30 from your aligned BAM file.
Dependency Matrix
Required Modules
samtoolspysam
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: sam-bam-basics Download link: https://github.com/pradyumnasagar/open-research-skills/archive/main.zip#sam-bam-basics Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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