scientific-human-cell-atlas
CommunityAccess HCA data and CELLxGENE census pipelines.
Authornahisaho
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Access to comprehensive Human Cell Atlas (HCA) data and CELLxGENE Census resources is scattered across portals, making it hard for researchers to locate relevant projects, retrieve files, and perform cross-dataset cell-type analyses.
Core Features & Use Cases
- Discover HCA Data Portal projects and related metadata (organ, disease, library method) through unified search.
- Query CELLxGENE Census to access large-scale single-cell atlases, filter by tissue and disease, and export ready-to-analyze data.
- Orchestrate end-to-end atlas workflows: from project search to data retrieval, preprocessing, and cell-type composition analysis.
Quick Start
Run an HCA atlas pipeline to search projects for a given organ and disease, download files, query CELLxGENE Census, and perform a cell-type composition analysis.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: scientific-human-cell-atlas Download link: https://github.com/nahisaho/satori/archive/main.zip#scientific-human-cell-atlas Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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