scientific-literature-search

Aggregate scholarly literature metadata and citation networks from five databases.

3|1|Updated Feb 11, 2026
One-click install
npx skills add https://github.com/nahisaho/satori --skill scientific-literature-search-nahisaho
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: scientific-literature-search
Source: https://github.com/nahisaho/satori/tree/main/src/.github/skills/scientific-literature-search
Command: npx skills add https://github.com/nahisaho/satori --skill scientific-literature-search-nahisaho

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires requests, pandas, networkx.

What problem does it solve?

Automatically searches and aggregates scholarly literature across major databases (PubMed, Semantic Scholar, OpenAlex, EuropePMC, and CrossRef) to provide comprehensive metadata, citation networks, and author/institution metrics for systematic reviews and research planning.

Core Features & Use Cases

  • Multi-DB search & retrieval: Query five databases with MeSH terms and semantic search capabilities to discover relevant papers.
  • Citation & author metrics: Retrieve citations, authors, journals, and institution metrics to assess impact and collaboration patterns.
  • Systematic-review readiness: Produce structured metadata suitable for literature reviews, meta-analyses, and PRISMA-style reporting.

Quick Start

Run a literature search across PubMed, Semantic Scholar, OpenAlex, EuropePMC, and CrossRef with a query of your choice to obtain a structured metadata set.

Frequently Asked Questions about scientific-literature-search

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I search multiple scholarly databases like PubMed and OpenAlex at once for a systematic review?

To search multiple scholarly databases at once, you can aggregate literature from PubMed, Semantic Scholar, OpenAlex, EuropePMC, and CrossRef to retrieve structured metadata for systematic reviews. This approach returns titles, abstracts, authors, and citation metrics.

Can I retrieve citation networks and author metrics across biomedical and multidisciplinary domains?

Yes, you can retrieve citation networks and author metrics across biomedical and multidisciplinary domains by querying aggregated databases. This provides comprehensive citation data and institution metrics to assess research impact and collaboration patterns.

What is the best way to gather structured metadata for PRISMA-style literature mapping?

Gathering structured metadata for PRISMA-style literature mapping requires querying databases like EuropePMC and CrossRef. Aggregating these sources produces structured outputs including titles, abstracts, venues, and years suitable for meta-analyses and reporting.

Does this literature search approach require API access to Semantic Scholar and EuropePMC?

Yes, this literature search approach requires API access to the five target databases: PubMed, Semantic Scholar, OpenAlex, EuropePMC, and CrossRef. Access is necessary to query MeSH terms and retrieve comprehensive scholarly metadata.

How do I use MeSH terms for semantic search across scholarly literature databases?

You can use MeSH terms for semantic search by querying integrated databases like PubMed and OpenAlex. This discovers relevant papers and returns structured metadata, including abstracts and venues, for multidisciplinary research planning.

What are the limitations of aggregating scholarly metadata from CrossRef and OpenAlex?

A limitation of aggregating scholarly metadata is the dependency on the external APIs of CrossRef, OpenAlex, and other databases. Users must manage API rate limits and ensure consistent access to retrieve titles, citation metrics, and abstracts successfully.