scientific-population-genetics
CommunityAutomate population genetics analyses.
Authornahisaho
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This pipeline provides structured methods to analyze population genetics data, including allele frequencies, Hardy-Weinberg testing, population structure, differentiation, and natural selection signals, enabling reproducible insights from genomic data.
Core Features & Use Cases
- Allele frequency and HWE QC: quantify minor allele frequencies and test Hardy-Weinberg equilibrium across populations.
- Population structure and differentiation: perform PCA and ADMIXTURE analyses, compute Fst, and interpret genetic separation among groups.
- Selection and integration: detect selection signals (iHS, Tajima's D, XP-EHH) and integrate results with GWAS Catalog and gnomAD for interpretation.
Quick Start
Run the population genetics pipeline on your genotype data to obtain allele frequencies, structure plots, and selection signals.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: scientific-population-genetics Download link: https://github.com/nahisaho/satori/archive/main.zip#scientific-population-genetics Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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