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sdrf:contribute

Official

Submit SDRF annotation to community repo via PR

Education & Research#pull request#community#github#validation#annotation#proteomics#sdrf
Authorbigbio
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This skill streamlines the final step of sharing a completed SDRF annotation for a ProteomeXchange dataset, ensuring the contribution is correctly validated, formatted, and submitted as a pull request to the community repository.

Core Features & Use Cases

  • Validation: Checks SDRF file integrity and runs optional validation before submission.
  • Automated PR creation: Generates fork, branch, commit, and PR using the GitHub CLI when available.
  • Guided contribution: Provides copy‑paste commands for environments without the CLI.
  • Supports new and update submissions: Handles both fresh annotations and updates to existing entries.

Quick Start

Ask the assistant to submit your annotated SDRF for a specific PXD accession to the community repository.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: sdrf:contribute
Download link: https://github.com/bigbio/sdrf-skills/archive/main.zip#sdrf-contribute

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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