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sdrf:explain

Official

Clarify SDRF columns, errors, and rules

Education & Research#ontology#validation#metadata#explain#annotation#proteomics#sdrf
Authorbigbio
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Helps researchers and annotators understand SDRF columns, error messages, and format rules so they can produce valid, analysis-ready proteomics metadata and avoid common annotation mistakes.

Core Features & Use Cases

  • Column explanations: Translate spec entries into plain-language definitions, why each column matters, expected types, allowed values, and reserved words based on the SDRF specification.
  • Error diagnosis and fixes: Explain validation errors, identify the violated rule, propose exact edits to correct values, and recommend prevention strategies.
  • Contextual examples and guidance: Provide real-world proteomics examples, distinctions between characteristics/comment/factor value, and links back to templates and ontology usage for PRIDE submissions and dataset curation.

Quick Start

Ask the skill to explain the purpose, format rules, and example values for the column characteristics[biological replicate].

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: sdrf:explain
Download link: https://github.com/bigbio/sdrf-skills/archive/main.zip#sdrf-explain

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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