sdrf:validate
OfficialValidate SDRF files and catch errors instantly
Authorbigbio
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Researchers and annotators need a reliable way to ensure that SDRF files are structurally correct, follow the appropriate templates, and contain valid ontology terms. Manual checks are time‑consuming and error‑prone.
Core Features & Use Cases
- Comprehensive structural checks: verifies column naming, required columns per template, and value formats.
- Ontology validation via OLS: ensures organism, disease, tissue, instrument, and modification terms are accurate.
- Consistency analysis: detects duplicate rows, mismatched replicates, and instrument inconsistencies across the entire file.
Quick Start
Ask the assistant to validate my SDRF file at 'experiment.sdrf' and report any errors.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: sdrf:validate Download link: https://github.com/bigbio/sdrf-skills/archive/main.zip#sdrf-validate Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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