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sdrf:techrefine

Official

Refine SDRF technical metadata using raw MS files

Data & Analytics#proteomics#modifications#instrument#raw-data#sdrf#techsdrf#mass-tolerance
Authorbigbio
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Proteomics SDRF files often contain inaccurate or missing technical metadata because these details are manually entered from publications or PRIDE records.

Core Features & Use Cases

  • Automated refinement: Leverages the techsdrf tool to detect instrument models, tolerances, acquisition mode, and modifications directly from raw mass‑spectrometry files.
  • Multiple input options: Works with PRIDE PXD accessions, local raw file directories, or SDRF‑only inspection.
  • Guided correction: Generates a refined SDRF, highlights mismatches, and lets the user approve each change.

Quick Start

Ask the assistant to run the /sdrf:techrefine skill on your SDRF file and associated raw MS data to obtain a refined SDRF.

Dependency Matrix

Required Modules

None required

Components

Standard package

đź’» Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: sdrf:techrefine
Download link: https://github.com/bigbio/sdrf-skills/archive/main.zip#sdrf-techrefine

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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