Retrieve chemical–protein interactions from STITCH with resolved identifiers and scores.
npx skills add https://github.com/QSong-github/DrugClaw --skill stitch-query
Please help me install this Agent Skill. Skill: stitch-query Source: https://github.com/QSong-github/DrugClaw/tree/main/skills/dti/stitch Command: npx skills add https://github.com/QSong-github/DrugClaw --skill stitch-query
STITCH provides a fast path to explore chemical–protein interactions across experimental data, databases, and text mining, enabling targeted drug-target inquiries.
Query STITCH to fetch interactions for a given chemical or protein (e.g., imatinib) and review the returned partners.
High-intent search queries and answers about installing and using this skill.
To query chemical-protein interactions for a drug target, provide a chemical or protein identifier such as a CID or free-text name. The tool auto-detects the input type, resolves STITCH and STRING identifiers, and returns interactors with actions and confidence scores.
Yes, you can retrieve STITCH interactions using a free-text chemical name instead of an ID. The query tool auto-detects free-text names alongside CIDm, CIDs, or STRING IDs, and automatically resolves them into the required STITCH identifiers to fetch interaction data.
Querying the STITCH API does return confidence scores for protein interactions. Results include structured data detailing interactors, action mechanisms, and associated evidence scores to help evaluate the reliability of each chemical-protein interaction.
You can filter STITCH protein interactions by species during a query by applying the species filtering parameter. This configuration restricts the retrieved chemical-protein interaction network to the specified organism, ensuring the structured output is relevant to your target biology.
The best way to limit returned interactors from a STITCH query is by using the configurable limits parameter. This constrains the volume of chemical-protein interaction records retrieved via the REST API, keeping the structured output manageable for downstream analysis.
STITCH API query outputs are structured for downstream drug-target analysis. The tool returns formatted data containing identifiers, names, and interaction actions with scores, making the results directly suitable for integration into analytical pipelines.
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Runchuan-BUQueries OpenTargets Platform for drug-target associations and disease-gene evidence via structured GraphQL responses.
nahisahoIntegrate STRING, BioGRID, and STITCH to construct and analyze protein-protein interaction networks.
nahisahoRetrieve and score chemical–protein interactions from the STITCH REST API.
