tooluniverse-precision-oncology

Integrate CIViC, ClinVar, OpenTargets, and ClinicalTrials.gov to generate evidence-graded cancer treatment options.

1.6k|244|Updated Mar 3, 2025
One-click install
npx skills add https://github.com/mims-harvard/ToolUniverse --skill tooluniverse-precision-oncology
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: tooluniverse-precision-oncology
Source: https://github.com/mims-harvard/ToolUniverse/tree/main/skills/tooluniverse-precision-oncology
Command: npx skills add https://github.com/mims-harvard/ToolUniverse --skill tooluniverse-precision-oncology

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Clinicians often struggle to translate complex molecular data into concrete treatment plans. This Skill consolidates evidence from CIViC, ClinVar, OpenTargets, ClinicalTrials.gov, and pathway analyses to propose ranked, biomarker-driven therapies and trial options.

Core Features & Use Cases

  • Evidence-graded treatment recommendations based on patient mutations (EGFR, KRAS, BRAF, etc.) and resistance mutations.
  • Clinical trial matching across ongoing studies tuning to biomarker and cancer type.
  • Comprehensive reporting with sources, rationale, and next-step guidance.

Quick Start

Use this Skill to generate a treatment plan for a patient with EGFR L858R NSCLC or KRAS G12C after platinum therapy.

Frequently Asked Questions about tooluniverse-precision-oncology

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I match patient mutations to actionable cancer treatment options?

To match patient mutations to actionable cancer treatment options, this Skill integrates CIViC, ClinVar, OpenTargets, and ClinicalTrials.gov to generate evidence-graded, biomarker-driven therapy recommendations and trial matches for mutations like EGFR, KRAS, and BRAF.

Can I find clinical trial eligibility based on a tumor's molecular profile?

Yes, you can find clinical trial eligibility based on a molecular profile. This Skill matches ongoing ClinicalTrials.gov studies to specific biomarkers and cancer types, identifying relevant trials for patients with targetable mutations or resistance scenarios.

How does evidence grading work for precision oncology therapies?

Evidence grading for precision oncology therapies works by consolidating and ranking data from public knowledge bases like CIViC and OncoKB. This process evaluates the strength of biomarker-drug associations to propose structured, report-ready treatment plans with clear rationale.

Do I need access to public knowledge bases to identify drug resistance treatments?

Yes, you need access to public knowledge bases like CIViC and ClinVar to identify drug resistance treatments. The Skill integrates these external databases to analyze resistance mutations and propose alternative ranked therapies and clinical trial options.

What is the best way to generate a structured report for EGFR or KRAS mutation treatment plans?

The best way to generate a structured report for EGFR or KRAS treatment plans is to input the molecular tumor profile into this Skill. It integrates pathway analyses and trial data to output a comprehensive, report-ready plan with sources and next-step guidance.

Does this precision oncology approach work for both solid tumors and resistance scenarios?

Yes, this precision oncology approach works for both solid tumors and resistance scenarios. It applies structure-based analyses and biomarker matching across solid tumors to identify actionable treatment options for both initial mutations and acquired drug resistance.