trajectory-pseudotime
CommunityInfer cellular trajectories and pseudotime.
Authorchenyhvvvv
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Infer developmental trajectories and pseudotime ordering from gene expression data, enabling researchers to map lineage relationships and differentiation dynamics.
Core Features & Use Cases
- Palantir-based trajectory analysis with diffusion maps, entropy, and fate probabilities.
- DPT (Diffusion Pseudotime) for lightweight, fast trajectory estimation.
- Root-cell guidance and both linear and branching trajectory workflows; outputs stored in adata.obs and adata.uns.
Quick Start
Load your slice data, choose a root cell type, and run Palantir or DPT to compute pseudotime.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: trajectory-pseudotime Download link: https://github.com/chenyhvvvv/STAT-agent/archive/main.zip#trajectory-pseudotime Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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