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turingdb-graph

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Build, query, and analyze biomedical knowledge graphs in TuringDB.

Education & Research#knowledge graph#bioinformatics#biomedical#cypher#turingdb
AuthorMubasherMohammed
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill allows users to build, query, and analyze biomedical knowledge graphs using TuringDB, a columnar graph database with git-like versioning.

Core Features & Use Cases

  • Graph Building: Ingest CSV/TSV/GML/JSONL files into a TuringDB graph.
  • Querying: Run arbitrary Cypher queries against a graph.
  • Cohort Analysis: Perform fixed cohort analyses on a patient-centric graph.
  • Demo: Run end-to-end examples with synthetic datasets.
  • Use Case: A researcher wants to build a knowledge graph from a patient cohort and analyze the most common conditions and medications. They can use this Skill to build the graph, query it for specific information, and perform cohort analyses.

Quick Start

Use the turingdb-graph skill to build a graph from the attached CSV file 'patient_data.csv' and analyze the cohort.

Dependency Matrix

Required Modules

turingdbpandasfastapiuvicornpydantictabulate

Components

scriptsreferences

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: turingdb-graph
Download link: https://github.com/MubasherMohammed/opencode-BioInfo/archive/main.zip#turingdb-graph

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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