Searches the UK Biobank schema to locate fields and publications by embedding documents in ChromaDB.
npx skills add https://github.com/ClawBio/ClawBio --skill ukb-navigator
Please help me install this Agent Skill. Skill: ukb-navigator Source: https://github.com/ClawBio/ClawBio/tree/main/skills/ukb-navigator Command: npx skills add https://github.com/ClawBio/ClawBio --skill ukb-navigator
UKB Navigator solves the difficulty researchers face when locating the right UK Biobank data fields, categories, and publications among thousands of entries by providing fast, natural-language semantic search over the UKB schema.
Ask the UKB Navigator to find UK Biobank fields related to blood pressure and save a markdown report to /tmp/ukb_report.
High-intent search queries and answers about installing and using this skill.
You can search for UK Biobank fields by providing natural language descriptions to match against the data schema. The tool embeds schema documents and returns ranked matches with similarity scores, enabling you to locate specific field IDs without manual browsing.
Yes, you can search UK Biobank categories for imaging, genomics, and health records. The tool enables category navigation and semantic field lookup, allowing you to explore specific data domains and retrieve relevant field IDs for phenotype definition and cohort construction.
The best way to define phenotypes using UK Biobank field-level metadata is to apply semantic search to locate relevant variables. The tool embeds schema documents into a ChromaDB collection, returning ranked matches with similarity scores to ensure your phenotype definitions are backed by accurate field-level data.
Yes, UKB Navigator supports reproducible reports and CSV exports for cohort construction. After performing semantic search across the UKB schema, you can generate markdown reports and CSV files documenting your selected fields, categories, and related publications to ensure reproducible research.
No, you do not strictly need VoyageAI embeddings to search the UK Biobank schema with ChromaDB. The tool embeds schema documents into a ChromaDB collection using VoyageAI or default embedding functions, allowing semantic search to proceed with either embedding method.
Semantic search returns specific UKB field matches by embedding schema documents into a ChromaDB collection using VoyageAI or default embedding functions. This vectorizes the 12,000+ UK Biobank field descriptions, allowing the system to calculate similarity scores against your natural language queries and return ranked matches.
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