ukb-navigator

Search UK Biobank data fields and publications using natural language queries.

Updated May 10, 2026

Search Tags:#semantic search #bioinformatics #UK Biobank #data field lookup #biobank research

Ready to run

npx skills add https://github.com/MubasherMohammed/opencode-BioInfo --skill ukb-navigator-mubashermohammed

💬 Prompt for ChatGPT / Claude Chat▼

Please help me install this Agent Skill.
Skill: ukb-navigator
Source: https://github.com/MubasherMohammed/opencode-BioInfo/tree/main/python/skills/ukb-navigator
Command: npx skills add https://github.com/MubasherMohammed/opencode-BioInfo --skill ukb-navigator-mubashermohammed

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires chromadb, voyageai, and includes scripts (resource) and references (resource) components.

What problem does it solve?

This Skill simplifies the process of finding relevant UK Biobank data fields and publications, enabling researchers to quickly locate the information they need for their studies.

Core Features & Use Cases

Semantic Field Search: Query 12,000+ UK Biobank data fields using natural language.
Category Navigation: Browse through various data categories like imaging, genomics, and health records.
Field Lookup: Directly search for fields by their UK Biobank field ID.
Publication Search: Find publications related to specific research topics.
Schema Embedding: Indexes the UKB schema into ChromaDB for fast retrieval.

Quick Start

Search for UK Biobank fields related to "cardiovascular risk factors".

Frequently Asked Questions about ukb-navigator

High-intent search queries and answers about installing and using this skill.

FAQPage Schema

How do I find UK Biobank data fields using natural language queries?▼

Semantic search over the UK Biobank schema identifies relevant fields using natural language. It indexes 12,000+ data fields into ChromaDB using Voyage AI embeddings, enabling you to find study variables without knowing exact field IDs.

Can I search for UK Biobank publications related to specific research topics?▼

Yes, you can find publications related to specific research topics. The Skill matches natural language queries against relevant UK Biobank publications, helping you discover existing biobank research connected to your areas of interest.

Do I need Python and ChromaDB to perform semantic search on the UK Biobank schema?▼

Yes, you need Python and ChromaDB to index the UK Biobank schema for fast retrieval. The Skill also requires Voyage AI to generate the schema embeddings necessary for querying data fields and publications.

What is the best way to look up a UK Biobank field if I already know the field ID?▼

The best way to look up a known field is using the direct field lookup feature. You can search for UK Biobank fields directly by their field ID, bypassing semantic search to retrieve exact schema information instantly.

Does semantic search work for navigating UK Biobank categories like imaging and genomics?▼

Yes, semantic search supports browsing categories like imaging, genomics, and health records. You can navigate these data categories to locate the specific UK Biobank fields required for your bioinformatics research.