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wiki-export

Export Obsidian wikilink graphs to graph.json, graph.graphml, cypher.txt, and graph.html.

3.2k|320|Updated Apr 6, 2026
Search Tags:#obsidian#export#knowledge-graph#neo4j#wikilink#graphml
One-click install
npx skills add https://github.com/Ar9av/obsidian-wiki --skill wiki-export-ar9av
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: wiki-export
Source: https://github.com/Ar9av/obsidian-wiki/tree/main/.skills/wiki-export
Command: npx skills add https://github.com/Ar9av/obsidian-wiki --skill wiki-export-ar9av

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Obsidian wikis store knowledge as interconnected Markdown pages; exporting their knowledge graph into standard formats enables external analysis, visualization, and integration with other tools without re-running in-app queries.

Core Features & Use Cases

  • Export the wiki's wikilink graph to structured formats: graph.json, graph.graphml, cypher.txt, and graph.html for Gephi, Neo4j, or custom tooling.
  • Optional visibility-based filtering to exclude internal or sensitive pages before export.
  • Use cases include archiving knowledge graphs, performing graph analytics, or visualizing relationships in external tools.

Quick Start

Run the wiki-export skill to generate the graph outputs in wiki-export/.

Frequently Asked Questions about wiki-export

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I export an Obsidian knowledge graph to external visualization tools?▼

To export an Obsidian knowledge graph, run the wiki-export skill to generate graph.json, graph.graphml, cypher.txt, and graph.html files for use in external tools. It reads your vault path from a .env file and writes outputs to the wiki-export directory.

Can I import my Obsidian wikilinks into Neo4j?▼

Yes, you can import Obsidian wikilinks into Neo4j by running the wiki-export skill to generate a cypher.txt file containing the graph data. You then load this cypher script directly into your Neo4j database.

What file formats are generated when exporting an Obsidian vault?▼

Exporting an Obsidian vault generates four formats: graph.json, graph.graphml, cypher.txt, and graph.html. These files support integration with various graph analytics and visualization platforms like Gephi and Neo4j.

Do I need frontmatter and wikilinks to export my Obsidian graph?▼

Yes, the wiki-export skill applies to Obsidian vaults that contain wikilinks and frontmatter. It relies on these structural elements to map the relationships and metadata required for generating the graph export files.

How do I visualize my Obsidian wiki graph in Gephi?▼

To visualize an Obsidian wiki graph in Gephi, run the wiki-export skill to produce a graph.graphml file. You then import this graphml file directly into Gephi to render and analyze the network visually.

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