LiorZ
Community@liorz · Tel Aviv, Israel
mostly Interested in topics that are in the intersection of Biology, CS and engineering
Agent Skills by LiorZ
Showing 16 vetted skills indexed across 1 GitHub repositories.
LiorZprotflow
Orchestrate protein-design pipelines across multiple tools via a unified API.
LiorZfoundry
Automate Foundry toolkit extension and de novo design workflows.
LiorZbioemu
Sample protein sequences to generate backbone conformation ensembles with YAML-configurable denoiser pipelines.
LiorZdisco
Design protein backbones and sequences conditioned on ligands, DNA, or RNA.
LiorZesm-biohub
Run Biohub protein-language-model tools for embeddings, scoring, and design workflows.
LiorZplacer
Denoise and rebuild atomic coordinates in protein-ligand complexes to generate stochastic ensembles.
LiorZbindcraft
Automate de novo protein binder design with AF2 and PyRosetta validation.
LiorZboltz
Predict biomolecular structures and affinities from YAML inputs via CLI diffusion workflow.
LiorZfair-esm
Run FAIR's ESM protein models for embeddings, ESMFold structure prediction, inverse folding, and variant analysis.
LiorZinvrotzyme
Enumerate clash-free catalytic rotamer assemblies from Rosetta CST files into PDB outputs.
LiorZbiotite
Read, manipulate, analyze, and fetch biomolecular structures and sequences in Python.
LiorZcaver
Identify and analyze transport tunnels in protein structures from PDB inputs.
LiorZgenie3
Automate end-to-end de novo protein design workflows with YAML experiment schemas.
LiorZboltzgen
Generate ranked protein binder designs from YAML specifications using diffusion and inverse folding.
LiorZprotenix
Fold biomolecular complexes from sequences and ligand specifications into CIF structures.
LiorZchai-lab
Predict biomolecular complex structures from FASTA-like inputs to CIF and NPZ outputs.