skills.rest
genomoncologygenomoncologyOfficial·2 Agent Skills Included

biomcp

Query 30 biomedical databases with one simple command grammar

Searches PubMed, ClinVar, ClinicalTrials.gov, OncoKB, and 30 trusted biomedical sources through one unified command grammar. Eliminates the manual work of learning separate APIs, identifiers, and search habits for every gene, variant, drug, trial, or disease database. Lets researchers, clinicians, and AI agents pivot between articles, variants, pathways, and drug safety data without rebuilding queries.
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npx skills add genomoncology/biomcp --all -g -y
Available:

Tells the AI agent how BioMCP's CLI and MCP server are organized, where packaged skills and documentation live, and which contract gates and skill rails to follow when working in this repository.

All Skills in This Repository (2)

Pure Emerald Level Indicators
📦 In Repo
genomoncologygenomoncology

biomcp

Search genes, variants, trials, and articles across biomedical data sources.

Official
Advanced
📦 In Repo
genomoncologygenomoncology

biomcp-research

Conducts biomedical literature and variant research with the BioMCP CLI and files tool gaps as repo issues.

Official
Intermediate

Frequently Asked Questions

FAQPage Schema
How to install BioMCP?▼

Run `npx skills add genomoncology/biomcp --all -g -y` in your terminal to install all skills in this suite globally.

What biomedical sources does BioMCP cover?▼

It connects to about 30 trusted sources including PubMed, ClinVar, ClinicalTrials.gov, OncoKB, Reactome, gnomAD, and OpenFDA through one consistent command grammar.

Can AI agents use BioMCP directly?▼

Yes. BioMCP runs as an MCP server, so agents like Claude Code, Codex, and Claude Desktop can call the same search and retrieval tools natively.

How do I research a gene or variant with BioMCP?▼

Start with a command like `biomcp get gene BRAF` or `biomcp get variant "BRAF V600E" clinvar`, then pivot into related trials, articles, drugs, or pathways without rebuilding your query.

Do I need programming skills to use BioMCP?▼

No. You type plain structured commands or let your AI agent run them for you, and BioMCP returns compact evidence-focused results from live public data.

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