jaechang-hitsCommunity·150 Agent Skills Included

SciAgent-Skills

Bioinformatics, drug discovery, and proteomics analysis workflows

Provides 199 ready-to-use life sciences skills covering genomics, RNA-seq, proteomics, drug discovery, biostatistics, and scientific writing. Eliminates manual lookup of database APIs, docking parameters, and analysis pipeline boilerplate through runnable code examples and troubleshooting tables. Helps researchers complete computational biology tasks faster with validated workflows for tools like RDKit, Scanpy, AutoDock Vina, and AlphaFold.

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npx skills add jaechang-hits/SciAgent-Skills --all -g -y

Available:

Instructs the agent on how to classify, scaffold, and author new life sciences skill entries using the repository's templates, category rules, and registry validation workflow.

All Skills in This Repository (150)

Pure Emerald Level Indicators

📦 In Repo

jaechang-hits

alphafold-database-access

Retrieve AlphaFold DB protein structures by UniProt ID and download PDB/mmCIF files.

zinc-database

Query the ZINC database REST API for chemical compounds by molecular properties and SMILES similarity.

pytdc-therapeutics-data-commons

Load PyTDC drug discovery datasets with standardized splits and metrics.

molfeat-molecular-featurization

Convert SMILES strings into numerical representations using over 100 featurizers.

pubchem-compound-search

Query PubChem for compounds by identifiers and retrieve molecular properties.

unichem-database

Cross-reference chemical compound identifiers across over 50 scientific databases.

ddinter-database

Queries DDinter REST API for drug-drug interaction severity, mechanisms, and recommendations.

chembl-database-bioactivity

Query ChEMBL for bioactive molecules, drug targets, and bioactivity measurements via the Python SDK.

dailymed-database

Query DailyMed REST API for FDA drug labeling by name, NDC, or RxCUI.

medchem

Apply medicinal chemistry filters to chemical compounds using RDKit and datamol.

rowan

Perform cloud-based quantum chemistry calculations with the rowan Python SDK.

gtopdb-database

Query the GtoPdb REST API for receptor-ligand interaction data.

Community

Intermediate

Frequently Asked Questions

FAQPage Schema

How to install SciAgent-Skills?▼

Run `npx skills add jaechang-hits/SciAgent-Skills --all -g -y` in your terminal to install all 199 scientific skills globally.

What can SciAgent-Skills do for bioinformatics analysis?▼

It provides step-by-step runnable workflows for RNA-seq, single-cell analysis, variant calling, and genomics using tools like Scanpy, DESeq2, and BioPython. Each skill includes code examples, key parameters, and troubleshooting guidance.

Does SciAgent-Skills cover drug discovery tasks?▼

Yes. It includes 26 skills for molecular docking (AutoDock Vina, DiffDock), cheminformatics (RDKit, datamol), bioactivity databases (ChEMBL, PubChem, DrugBank), and retrosynthesis planning.

Which AI agents work with SciAgent-Skills?▼

The skills are plain markdown files that work with Claude Code, OpenAI Codex, Cursor, Windsurf, and any agent that can read project files. Integration templates for each agent are included in the repository.

Do I need coding experience to use these skills?▼

Basic Python familiarity helps, but each skill provides copy-paste code examples with plain-English explanations. Your agent reads the skill file and executes the analysis based on your natural language request.