archaic-introgression
CommunityDetect archaic introgression segments in modern human genomes
AuthorMubasherMohammed
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill identifies Neanderthal and Denisovan introgression segments in modern human genomes, aiding in understanding human evolution and disease susceptibility.
Core Features & Use Cases
- Introgression Detection: Identifies segments shared between modern humans and archaic hominins.
- Method Variants: Utilizes IBDmix, Sprime, and hmmix methods for comprehensive analysis.
- Use Case: For a researcher analyzing a genome, this Skill can help identify archaic ancestry and its impact on the individual's genome.
Quick Start
Run the archaic introgression skill with the following command:
python archaic_introgression.py --input modern.vcf --archaic archaic.vcf --output /tmp/introgression
Dependency Matrix
Required Modules
numpyibdmixsprimehmmixbcftools
Components
scriptsreferencesassets
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: archaic-introgression Download link: https://github.com/MubasherMohammed/opencode-BioInfo/archive/main.zip#archaic-introgression Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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