Organize and convert neuroscience datasets into BIDS-compliant directory structures.
npx skills add https://github.com/gabrielvuksani/wotann --skill bids-gabrielvuksani
Please help me install this Agent Skill. Skill: bids Source: https://github.com/gabrielvuksani/wotann/tree/main/skills/scientific/bids Command: npx skills add https://github.com/gabrielvuksani/wotann --skill bids-gabrielvuksani
This Skill helps you correctly structure and verify Brain Imaging Data Structure (BIDS) datasets so neuroscience and biomedical files are consistently organized, discoverable, and ready for downstream tools.
sub-* / ses-* / <datatype>/ hierarchy and query datasets using BIDS entities (subject, session, task, run, acquisition, etc.)..bidsignore to manage what gets checked.dataset_description.json, and write/maintain JSON sidecar metadata and events/participants files.Use the bids skill to validate that your dataset follows BIDS and to guide you in adding any missing dataset_description.json, sidecar fields, and required event/metadata files for tasks like func/bold.
High-intent search queries and answers about installing and using this skill.
To convert DICOM to BIDS, you organize raw imaging data into the `sub-*/ses-*/<datatype>/` hierarchy using conversion pipelines like HeuDiConv, dcm2bids, or BIDScoin, generating required `dataset_description.json` and JSON sidecars for compliance.
BIDS validation checks neuroimaging datasets for correct entity-based file naming, metadata inheritance, required JSON sidecars, and proper `sub-*/ses-*/<datatype>/` directory hierarchy against the BIDS specification using validator-compatible layouts.
You create valid `_events.tsv` and `dataset_description.json` files by applying BIDS schema knowledge to author required metadata sidecars and task event files, ensuring proper entity-based naming for functional bold data.
Yes, you can use pybids to query MRI, EEG/MEG/iEEG, and DWI datasets by applying BIDS entities like subject, session, task, run, and acquisition to organize modalities into the correct directory hierarchy.
Manage BIDS validation errors for derivatives and metadata sidecars by using a `.bidsignore` file to specify which paths the validator should skip, while correcting missing required fields in your JSON sidecars and event files.
You need BIDS metadata inheritance when organizing biomedical datasets with multiple sessions or modalities, allowing shared JSON sidecar metadata to propagate down to lower-level files while validating compliance across the directory structure.
crazymsnOrganize neuroscience datasets into BIDS-compliant directory structures.
bcmcpherManage Nipoppy neuroimaging dataset workflows from initialization to extraction.
tassiovaleOrganize, query, validate, and convert neuroscience data into BIDS-compliant datasets.
framerslabExecute shell commands and manage filesystem operations for autonomous agents.