bio-workflows-neoantigen-pipeline
OfficialEnd-to-end neoantigen discovery workflow.
Education & Research#bioinformatics#neoantigen#pvactools#mhc-binding#hla-typing#immunogenicity#vaccine-design
Authorstellaromics
Version1.0.0
Installs0
System Documentation
What problem does it solve?
End-to-end neoantigen discovery from somatic mutations to ranked vaccine candidates. Integrates HLA typing, MHC binding prediction, pVACtools neoantigen calling, and immunogenicity scoring to support personalized cancer immunotherapy.
Core Features & Use Cases
- HLA typing integration and MHC binding prediction with pvactools
- Neoantigen calling and immunogenicity scoring to rank candidates
- End-to-end workflow suitable for personalized vaccines and biomarker discovery
Quick Start
Run the neoantigen discovery workflow on your tumor somatic VCF and HLA types to produce a ranked list of vaccine candidates.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-workflows-neoantigen-pipeline Download link: https://github.com/stellaromics/fast-bioinfo/archive/main.zip#bio-workflows-neoantigen-pipeline Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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