catgo-gibbs-pipeline

Compute Gibbs free energies and overpotentials from DFT energies for catalytic reactions.

181|20|Updated Apr 29, 2026
One-click install
npx skills add https://github.com/Hello-QM/catgo-LRG --skill catgo-gibbs-pipeline
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: catgo-gibbs-pipeline
Source: https://github.com/Hello-QM/catgo-LRG/tree/main/server/catgo/workflow/skills/catgo-gibbs-pipeline
Command: npx skills add https://github.com/Hello-QM/catgo-LRG --skill catgo-gibbs-pipeline

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires ase, and includes scripts (resource) and references (resource) components.

What problem does it solve?

This workflow computes adsorption and reaction Gibbs free energies and electrochemical overpotentials from DFT energies, enabling thermodynamic insight into catalytic surfaces.

Core Features & Use Cases

  • Per-species Gibbs workflow: geo_opt → freq → Gibbs for each species, producing ΔG values and a final η.
  • Free-energy diagrams: assemble ΔG_i across reaction steps to generate free-energy diagrams and identify limiting steps in HER/ORR/OER/CO2RR/NRR.
  • CHE-based references: apply CHE references to relate proton-electron transfers to chemical potentials and avoid O2 referencing pitfalls.
  • Campaign orchestration: integrates with CatGo campaigns for end-to-end planning and automation of the workflow.

Quick Start

Start with a geo_opt-converged structure and run the per-species geo_opt → freq → Gibbs pipeline to produce ΔG values and the η overpotential.

Frequently Asked Questions about catgo-gibbs-pipeline

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I calculate overpotentials and Gibbs free energies from VASP DFT results?

You can calculate overpotentials and Gibbs free energies from VASP DFT results by running a per-species geo_opt → freq → Gibbs workflow. This computes adsorption and reaction ΔG values to determine the final electrochemical η for catalytic surfaces.

What is the computational hydrogen electrode method for catalysis reaction energy calculations?

The computational hydrogen electrode (CHE) method relates proton-electron transfers to chemical potentials for catalysis reaction energy calculations. It applies CHE references to avoid O2 referencing pitfalls when assembling ΔG across HER, ORR, OER, CO2RR, and NRR steps.

How do I set up a frequency calculation workflow to get Gibbs energies for adsorption?

To get Gibbs energies for adsorption, set up a frequency calculation workflow starting with a geo_opt-converged structure. The pipeline runs per-species geo_opt → freq → Gibbs to produce ΔG values and identify limiting steps in free-energy diagrams.

Does this Gibbs energy pipeline support multiple electrocatalytic reactions like OER and CO2RR?

Yes, this Gibbs energy pipeline supports multiple electrocatalytic reactions including HER, ORR, OER, CO2RR, and NRR. It assembles ΔG_i across reaction steps to generate free-energy diagrams and calculate specific overpotentials for each catalytic study.

Do I need ASE to run the catgo-gibbs-pipeline for DFT energy analysis?

Yes, you need ASE installed as a dependency to run the catgo-gibbs-pipeline for DFT energy analysis. The workflow relies on ASE to handle structure manipulation and frequency calculations within the VASP-based geo_opt → freq → Gibbs pipeline.

Why use CHE references instead of O2 for calculating electrochemical overpotentials?

You use CHE references instead of O2 for calculating electrochemical overpotentials to avoid referencing pitfalls associated with O2 chemical potentials. This approach accurately relates proton-electron transfers to derive thermodynamic limits across catalytic reaction steps.