cnv-inference
CommunityInfer CNVs from gene data to map tumor clones.
Authorchenyhvvvv
Version1.0.0
Installs0
System Documentation
What problem does it solve?
CNV inference from gene expression data enables identification of tumor subclones and genomic alterations in cancer spatial transcriptomics.
Core Features & Use Cases
- Infer CNV scores from expression data to identify CNV-based clones.
- Output CNV score matrix (X_cnv) and CNV-based clone labels (cnv_leiden) for downstream analysis.
- Works with single-slice datasets and uses normal/reference cell types to anchor CNV detection.
Quick Start
Run the CNV inference workflow on your AnnData slice to generate CNV scores and clone labels.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
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Please help me install this Skill: Name: cnv-inference Download link: https://github.com/chenyhvvvv/STAT-agent/archive/main.zip#cnv-inference Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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