compbio-khmer-signatures
CommunityCompute pathogen k-mer signatures with khmer.
Authorwuyoscar
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Pathogen genomic k-mer signature computation using khmer, enabling biosurveillance by generating signatures and associated metadata for pathogen genomes, including virulence plasmids and pathogenicity islands.
Core Features & Use Cases
- khmer-based k-mer signature generation from pathogen genomes for rapid surveillance.
- Metadata capture including biosafety level, accession, and key genomic features.
- Use Case: Researchers can generate searchable signatures for environmental samples to aid outbreak monitoring and response.
Quick Start
Provide a pathogen genome sequence and have the model generate its khmer-based k-mer signature.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
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Please help me install this Skill: Name: compbio-khmer-signatures Download link: https://github.com/wuyoscar/ISC-Bench/archive/main.zip#compbio-khmer-signatures Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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