Parse SnapGene .dna files to extract sequences, features, and metadata.
npx skills add https://github.com/farnunglab/benchaid --skill snapgene
Please help me install this Agent Skill. Skill: snapgene Source: https://github.com/farnunglab/benchaid/tree/main/skills/snapgene Command: npx skills add https://github.com/farnunglab/benchaid --skill snapgene
Parse SnapGene .dna files and extract sequence, features, and metadata. This tool helps researchers access data from SnapGene files without manual parsing.
Run the SnapGene CLI on a .dna file to view a summary, list features, and export to GenBank or FASTA.
High-intent search queries and answers about installing and using this skill.
To parse SnapGene .dna files, this tool extracts sequences, feature coordinates, and metadata using the snapgene_reader and biopython libraries in a CLI context. It retrieves topology and feature information without requiring manual file parsing.
Yes, you can convert SnapGene .dna files to GenBank and FASTA formats. The tool parses the .dna file data and exports the extracted sequences and features directly into these standard formats for downstream analyses.
The best way to extract feature coordinates from a .dna file for plasmid mapping is using this parser. It reads SnapGene files to capture sequence, feature coordinates, and topology, helping researchers validate constructs and document plasmid maps quickly.
Yes, biopython is a required dependency to read SnapGene files in a research workflow. The tool leverages both biopython and snapgene_reader to parse .dna files and convert the extracted data to GenBank or FASTA outputs.
Yes, this SnapGene parser operates as a CLI script for sequence extraction. You run it on .dna files to view a summary, list features, and export the extracted sequence and metadata to GenBank or FASTA formats.
The limitations of using snapgene_reader for DNA sequence parsing are bounded by its dependency on the snapgene_reader and biopython libraries within a CLI context. It is specifically designed for parsing .dna files and exporting to GenBank or FASTA formats.
pradyumnasagarCompute length, GC content, and contig statistics for DNA and RNA sequences.
jaechang-hitsAnnotate plasmid DNA sequences with BLAST and generate GenBank, HTML, and CSV outputs.
farnunglabVerify protein-coding regions in plasmid DNA via six-frame translation against reference sequences.
wuyoscarGenerate khmer-based k-mer signatures and metadata from pathogen genome sequences.
