cosmic-database

You can download somatic mutation data from the COSMIC database by using this Skill to programmatically query and retrieve comprehensive cancer genomics datasets, including structural variants and copy number alterations for research.

Yes, you can retrieve the Cancer Gene Census for precision oncology applications. This Skill provides programmatic access to download curated lists of cancer-associated genes directly from the COSMIC database.

To access mutational signatures for cancer genomics analysis, use this Skill to download specific signature profiles from the COSMIC database, facilitating detailed pattern analysis for cancer research.

Yes, you need authentication and specific Python libraries including requests, pandas, and pysam to access COSMIC data. These dependencies are required for data retrieval and processing within the Skill.

The best way to programmatically query gene fusions in the COSMIC database is using this Skill, which facilitates querying somatic mutations, gene fusions, and copy number alterations for cancer research.

Yes, this Skill supports downloading copy number alterations for cancer research. It enables programmatic access to the COSMIC database to retrieve comprehensive mutation data including these specific alterations.