Download cancer mutation datasets from the COSMIC database programmatically.
npx skills add https://github.com/biomaps-infra/blender-opencode --skill db-cosmic
Please help me install this Agent Skill. Skill: db-cosmic Source: https://github.com/biomaps-infra/blender-opencode/tree/main/.opencode/skills/db-cosmic Command: npx skills add https://github.com/biomaps-infra/blender-opencode --skill db-cosmic
This Skill provides programmatic access to the COSMIC database, enabling users to download and analyze comprehensive cancer mutation data, gene lists, and mutational signatures.
Use the db-cosmic skill to download the Cancer Gene Census file.
High-intent search queries and answers about installing and using this skill.
To download COSMIC cancer mutation data programmatically, you can use this Skill to retrieve somatic mutations, Cancer Gene Census, and mutational signatures by authenticating and specifying file paths.
Using Python, you can retrieve somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, and copy number alterations from the COSMIC database for cancer genomics research.
Yes, accessing COSMIC somatic mutation files requires user authentication and specific file paths for data retrieval within your bioinformatics pipeline.
You can get the Cancer Gene Census by using this Skill to download the file, enabling you to identify known cancer-driving genes for targeted therapy research.
Yes, with pandas as a dependency, you can integrate downloaded COSMIC copy number alterations and structural variants into a dataframe for cancer research analysis.
Retrieving COSMIC gene fusion data requires specific file paths and user authentication, meaning you need proper COSMIC access credentials and predefined dataset paths for successful retrieval.
robotlearning123Query and download COSMIC cancer mutation data in TSV, CSV, and VCF formats.
hxk622Query and download somatic mutation data from the COSMIC database.
robinbarvaagDownload cancer mutation data, gene census, and mutational signatures from the COSMIC database.
sanand0Query and download somatic mutation data from the COSMIC database.
