Access Ensembl REST API for genomic data retrieval across 250+ species.
npx skills add https://github.com/yf8578/clawomics --skill ensembl-database-yf8578
Please help me install this Agent Skill. Skill: ensembl-database Source: https://github.com/yf8578/clawomics/tree/main/skills/ensembl-database Command: npx skills add https://github.com/yf8578/clawomics --skill ensembl-database-yf8578
This Skill provides programmatic access to the Ensembl genome database, enabling researchers to retrieve comprehensive genomic information for over 250 species without manual web browsing.
Use the ensembl-database skill to find all orthologs for the human gene BRCA2 in the mouse species.
High-intent search queries and answers about installing and using this skill.
Retrieve Ensembl genomic sequences and gene information by querying the REST API to look up genes by symbol or ID and access cross-references across 250+ species. The API returns sequence data and gene annotations directly for bioinformatics research.
Find orthologs across species using Ensembl comparative genomics endpoints to identify related genes in different organisms. The system queries the REST API to return ortholog and paralog data for comparative genomic studies.
Predict functional consequences of genetic variations using the Ensembl Variant Effect Predictor (VEP) via the REST API. The variant analysis feature queries genetic variations and returns predicted functional impact data for genomic research.
The Ensembl REST API supports coordinate mapping between different genome assemblies to facilitate comparative genomics. This feature allows researchers to translate genomic coordinates across assembly versions for accurate sequence retrieval.
Ensembl database genomic data retrieval supports comprehensive access across 250+ species via the REST API. This coverage enables researchers to perform gene lookups, sequence retrieval, and comparative genomics for diverse organisms.
Accessing the Ensembl genome database programmatically requires the ensembl_rest and requests dependencies. These libraries establish API connectivity to query genomic data and integrate retrieval functions into bioinformatics pipelines.
jimmc414Retrieve genomic data from the Ensembl REST API for over 250 species.
ammawlaQuery Ensembl's REST API for variant effects, regulatory features, and gene annotations.
ovachieverRetrieve and analyze vertebrate genomic data from the Ensembl REST API.
jackspaceQuery the Ensembl REST API for gene, sequence, and variant data.
