gene-database

Search and retrieve gene annotations and sequences across species via NCBI APIs.

Updated May 10, 2026

Search Tags:#api #sequence #batch #ncbi #annotation #gene #biomarker

Ready to run

npx skills add https://github.com/Imad-Oute/ResearchForge --skill gene-database-imad-oute

💬 Prompt for ChatGPT / Claude Chat▼

Please help me install this Agent Skill.
Skill: gene-database
Source: https://github.com/Imad-Oute/ResearchForge/tree/main/OpenSource-Projects/claude-scientific-skills/scientific-skills/gene-database
Command: npx skills add https://github.com/Imad-Oute/ResearchForge --skill gene-database-imad-oute

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires urllib, json, and includes scripts (resource) and references (resource) components.

What problem does it solve?

This Skill facilitates detailed querying of NCBI Gene via API, allowing users to search, retrieve, and analyze gene information efficiently.

Core Features & Use Cases

Gene Search and Retrieval: Search genes by symbol, ID, or related biological terms across species.
Metadata Access: Fetch detailed gene annotations including sequences, locations, and ontology.
Batch Processing: Handle multiple gene queries simultaneously for large-scale analyses.
Use Case: Researchers can quickly obtain gene summaries and sequence data for hundreds of genes, streamlining genomic annotation workflows.

Quick Start

Enter a gene symbol and organism into the CLI to retrieve all relevant information about that gene.

Frequently Asked Questions about gene-database

High-intent search queries and answers about installing and using this skill.

FAQPage Schema

How do I retrieve gene annotations and sequences from NCBI?▼

Use the NCBI API to search genes by symbol, ID, or biological terms across species, retrieving detailed metadata including summaries, sequences, locations, and related publications for bioinformatics workflows.

Can I batch process multiple gene queries simultaneously?▼

Yes, batch processing multiple gene queries simultaneously streamlines large-scale genomic analyses, allowing researchers to collect and validate sequence data and annotations for hundreds of genes at once.

What kind of gene information can I access using the NCBI API?▼

Access comprehensive gene information including targeted search results, detailed gene annotations, sequences, genomic locations, biological ontology, and related publications across multiple species.

Do I need API keys or specific dependencies to query NCBI gene data?▼

Querying NCBI gene data requires standard Python dependencies like urllib and json, enabling script interactions to streamline complex data collection and validation tasks for genomic annotations.

How does targeted gene search across species work for bioinformatics workflows?▼

Targeted gene search across species combines script interactions with NCBI APIs to query specific gene symbols or IDs, validating data collection and streamlining complex bioinformatics workflows.