Query and retrieve NCBI Gene data via E-utilities and Datasets API.
npx skills add https://github.com/swaruplab/operon --skill gene-database-swaruplab
Please help me install this Agent Skill. Skill: gene-database Source: https://github.com/swaruplab/operon/tree/main/src-tauri/protocols/gene-database Command: npx skills add https://github.com/swaruplab/operon --skill gene-database-swaruplab
This Skill provides programmatic access to NCBI Gene data via E-utilities and the Datasets API, enabling researchers to locate genes by symbol, retrieve metadata, and perform batch lookups.
Provide a list of gene symbols or IDs and run the appropriate scripts to fetch IDs, summaries, and gene details.
High-intent search queries and answers about installing and using this skill.
To batch lookup NCBI gene data, provide a list of gene symbols or IDs to fetch summaries, metadata, and gene details across organisms using E-utilities and the Datasets API.
NCBI E-utilities and the Datasets API retrieve gene descriptions, chromosomal locations, GO terms, RefSeq records, and transcripts to build annotated gene lists for downstream analysis.
Cross-organism gene comparisons are supported by querying NCBI Gene data via E-utilities to locate genes by symbol or ID across multiple species for comparative analyses.
An NCBI API key is optional for fetching gene annotations via E-utilities endpoints, but configuring one provides higher rate limits for batch processing and large-scale data retrieval.
Build annotated gene lists by batch fetching gene symbols, metadata, GO terms, and RefSeq transcripts via the Datasets API to prepare comprehensive inputs for enrichment analysis.
yf8578Search and retrieve gene annotations from NCBI Gene via E-utilities and Datasets API.
chenyhvvvvPerform GO enrichment analysis on gene lists using gseapy with FDR correction.
sanand0Query NCBI Gene database for gene annotations and sequences via E-utilities.
Yezez9Query NCBI Gene database via E-utilities and Datasets API for gene annotations.
