illumina-bridge
CommunityAutomate Illumina result bundle import and analysis
AuthorMubasherMohammed
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates the import of Illumina result bundles into the local-first ClawBio ecosystem, streamlining tertiary analysis and downstream routing.
Core Features & Use Cases
- Bundle Import: Automatically discovers and imports DRAGEN-exported Illumina result bundles.
- Metadata Normalization: Parses SampleSheet and QC metrics into a stable format.
- ICA Enrichment: Optionally enriches metadata using Illumina Connected Analytics.
- ClawBio Handoff: Writes reports, manifests, and suggests downstream analysis steps.
- Use Case: After running a DRAGEN analysis, use this Skill to import the results into ClawBio for further analysis and reporting.
Quick Start
Run the 'illumina-bridge' skill with the input bundle directory and output directory:
python skills/illumina-bridge/illumina_bridge.py --input <bundle_dir> --output <report_dir>
Dependency Matrix
Required Modules
requests
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: illumina-bridge Download link: https://github.com/MubasherMohammed/opencode-BioInfo/archive/main.zip#illumina-bridge Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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