Query KEGG REST data for pathways, genes, compounds, and drugs.
npx skills add https://github.com/Hung-3008/agusta --skill kegg-database-hung-3008
Please help me install this Agent Skill. Skill: kegg-database Source: https://github.com/Hung-3008/agusta/tree/main/.agents/skills/kegg-database Command: npx skills add https://github.com/Hung-3008/agusta --skill kegg-database-hung-3008
Enables researchers to perform direct, programmatic access to KEGG data via REST endpoints for retrieval of pathways, genes, compounds, and drugs without manual web scraping.
Retrieve a KEGG pathway entry and inspect the response to validate API access.
High-intent search queries and answers about installing and using this skill.
To query KEGG pathways and genes programmatically, this Skill provides direct REST API access via Python helpers like kegg_get and kegg_list, retrieving structured bioinformatics data for academic research workflows.
Yes, you can convert KEGG gene IDs to UniProt identifiers for cross-database mapping using the kegg_conv function, which handles ID conversion between KEGG and external databases for downstream analysis.
The best way to retrieve all human pathways and fetch gene members is using kegg_list for organism-specific pathway listings and kegg_link to map pathway entries to their associated genes.
You find specific compounds and drugs in the KEGG database by using the kegg_find function to search entries and kegg_ddi to retrieve drug-drug interaction data directly through the REST API endpoints.
Yes, there are strict entry limits enforced when fetching bulk pathway or gene data from KEGG REST endpoints to manage query sizes and ensure reliable API responses during pathway retrieval and ID conversion.
No, you do not need any external dependencies to use this KEGG REST API helper, as it operates independently with internal scripts and references to execute bioinformatics queries for pathways, genes, compounds, and drugs.
Runchuan-BUQuery KEGG REST API for pathway entries, gene lists, and gene records.
pur3v4d3rCross-reference biological identifiers across UniProt, KEGG, and ChEBI databases.
jackspaceAccess 40+ bioinformatics services and databases via a unified Python API.
rubenslivQuery KEGG REST endpoints for pathway, gene, and compound data.
