kegg-database

Name: kegg-database
Availability: InStock
Author: jaechang-hits

Query KEGG pathways, genes, compounds, and convert identifiers via REST API.

298|27|Updated Feb 18, 2026

Search Tags:#database #bioinformatics #compound #gene #pathway #kegg

Ready to run

npx skills add https://github.com/jaechang-hits/SciAgent-Skills --skill kegg-database-jaechang-hits

💬 Prompt for ChatGPT / Claude Chat▼

Please help me install this Agent Skill.
Skill: kegg-database
Source: https://github.com/jaechang-hits/SciAgent-Skills/tree/main/skills/genomics-bioinformatics/kegg-database
Command: npx skills add https://github.com/jaechang-hits/SciAgent-Skills --skill kegg-database-jaechang-hits

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires requests, and includes scripts (resource) and references (resource) components.

What problem does it solve?

This Skill provides direct access to the KEGG database, enabling users to query biological pathways, genes, compounds, and perform ID conversions without needing to navigate complex web interfaces.

Core Features & Use Cases

Pathway Mapping: Find pathways associated with specific genes (e.g., "Which pathways involve TP53?").
ID Conversion: Convert between KEGG IDs and external identifiers like UniProt or NCBI Gene.
Compound & Drug Info: Retrieve details and structures for chemical compounds and drugs.
Use Case: Map a list of human genes to their corresponding KEGG pathways to understand the biological processes they are involved in.

Quick Start

Use the kegg-database skill to find all human pathways that involve the gene with NCBI ID 7157.

Frequently Asked Questions about kegg-database

High-intent search queries and answers about installing and using this skill.

FAQPage Schema

How do I query KEGG biological pathways for a specific gene?▼

To query KEGG biological pathways for a specific gene, you use the Skill to access the KEGG REST API directly, mapping identifiers like NCBI Gene IDs to their corresponding human pathways.

Can I convert KEGG IDs to UniProt or NCBI identifiers?▼

Yes, you can convert KEGG IDs to UniProt or NCBI identifiers. The Skill facilitates cross-database identifier conversion between KEGG, NCBI, UniProt, and PubChem for seamless data integration.

How do I retrieve compound and drug information from the KEGG database?▼

You retrieve compound and drug information from the KEGG database by performing information retrieval operations through the Skill, which fetches details and structures for chemical compounds and drugs.

Do I need an API key to access the KEGG REST API for bioinformatics queries?▼

You do not need an API key for basic bioinformatics queries. The Skill provides direct REST API access to the KEGG database for listing entries, keyword searching, and information retrieval without authentication.

Can I check drug-drug interactions using the KEGG database?▼

Yes, you can check drug-drug interactions using the KEGG database. The Skill supports specific operations to query and retrieve interaction details directly through the KEGG REST API.

What is the best way to search for enzymes and diseases in KEGG?▼

The best way to search for enzymes and diseases in KEGG is using the Skill's keyword searching and listing operations, which query the KEGG REST API to find matching biological entries efficiently.