magmap
CommunityMap reads to genome collections fast
Education & Research#bioinformatics#nf-core#nextflow#metagenomics#samplesheet#genome mapping#metatranscriptomics
Authordanilomonge
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill removes the guesswork from running nf-core/magmap so an AI can launch a valid, reproducible read-mapping analysis without inventing flags or missing required inputs.
Core Features & Use Cases
- Validated pipeline execution: Uses the pinned magmap release metadata to keep commands, parameters, and provenance aligned with the exact pipeline version.
- Research-ready workflows: Supports metagenomic and metatranscriptomic mapping, quality control, trimming, genome selection, and feature quantification for large genome collections.
- Reliable outputs: Produces organized results, run metadata, and MultiQC summaries that can be reused in downstream analysis or reporting.
Quick Start
Ask the assistant to run nf-core/magmap on your samplesheet with an output directory and a Docker profile.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: magmap Download link: https://github.com/danilomonge/nf-claw/archive/main.zip#magmap Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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